chr5:140634792:C>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr5:140,014,377-140,014,377 View the variant detail on this assembly version. |
| hg38 | chr5:140,634,792-140,634,792 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.508 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.012 | asthma | We observed two interactions between SNPs in CD14 and LY96 with environmental en... | BeFree | 24902762 | Detail |
| <0.001 | asthma | We observed two interactions between SNPs in CD14 and LY96 with environmental en... | BeFree | 24902762 | Detail |
| <0.001 | Wheezing | Of the remaining 15 SNPs, for seven we found significant relationships between g... | BeFree | 25102764 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We observed two interactions between SNPs in CD14 and LY96 with environmental endotoxin exposure in ... | DisGeNET | Detail |
| We observed two interactions between SNPs in CD14 and LY96 with environmental endotoxin exposure in ... | DisGeNET | Detail |
| Of the remaining 15 SNPs, for seven we found significant relationships between genotype and endotoxi... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs2915863 dbSNP
- Genome
- hg38
- Position
- chr5:140,634,792-140,634,792
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs2915863
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.5085
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 8523
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
Genome browser